
This pizza-in-a-cupcake format combines everything you love about deep dish pizza in convenient, individual servings. Perfect for parties, family dinners, or when you want pizza but don't want to commit to making a whole pie from scratch.
I created these for my son's birthday party last year, and they were such a hit that they've become our Friday night tradition. The kids love building their own with different toppings.
Ingredients
- Refrigerated crescent roll dough serves as the perfect shortcut crust that puffs up beautifully in the muffin tin
- Pizza sauce use a high quality brand for best flavor or make your own if you have time
- Shredded mozzarella cheese opt for block cheese you shred yourself for better melting qualities
- Garlic powder adds depth of flavor to every bite without overpowering
- Assorted toppings pepperoni, ham, sausage, bell peppers, onions and mushrooms create endless combinations
How To Make Deep Dish Pizza Cupcakes
- Prepare the muffin tin
- Preheat your oven to 190°C and thoroughly grease a standard muffin tin with cooking spray. Make sure to coat the sides well as this helps with easy removal later.
- Create the dough cups
- Unroll the crescent dough and cut it into 8 equal squares. Work each square gently with your fingers to stretch it slightly before pressing into the muffin cups. Press firmly against bottom and sides to create a cup shape with no holes or tears.
- Layer the base
- Sprinkle a small amount of mozzarella directly onto the dough base. This creates a protective barrier that helps prevent the sauce from making the crust soggy. The cheese melts and forms a delicious first layer.
- Add sauce and toppings
- Carefully spoon pizza sauce over the initial cheese layer. Distribute remaining mozzarella evenly over sauce. This is your canvas for creativity. Add your favorite toppings in whatever combination you prefer. Finish with a light dusting of garlic powder for extra flavor.
- Bake to golden perfection
- Bake in your preheated oven for 15 to 18 minutes. Watch for the edges of the crust to turn a beautiful golden brown and for the cheese to become completely melted and bubbly. Let them cool for about 2 minutes before removing from the pan.
The crescent roll dough is truly the secret ingredient here. I originally tried making these with pizza dough but found the crescent rolls create that perfect flaky yet substantial crust that stands up to the toppings. My daughter once declared these better than regular pizza because every bite has the perfect crust to topping ratio.
Topping Combinations
These pizza cupcakes are the perfect canvas for creativity. Try classic combinations like pepperoni and cheese for kids or more adventurous pairings for adults. My personal favorite is a combination of crumbled sausage, sautéed mushrooms, and caramelized onions topped with a sprinkle of fresh basil after baking. For a Hawaiian twist, combine diced ham with small pineapple pieces and a touch of barbecue sauce mixed into the pizza sauce.

Make Ahead & Storage
These pizza cupcakes can be assembled up to 24 hours in advance and kept refrigerated until ready to bake. If making ahead, I recommend waiting to add the toppings until just before baking for maximum freshness. Leftovers store well in an airtight container in the refrigerator for up to 3 days. To reheat, place in a 350°F oven for 5 to 7 minutes or use an air fryer for 2 to 3 minutes for crispy results. Avoid microwave reheating as it can make the crust soggy.
Kid-Friendly Cooking Activity
Turn this recipe into a family cooking project by setting up a pizza cupcake bar. Prepare the dough cups and base cheese layer, then let everyone customize their own creations. This is especially fun for sleepovers or birthday parties. Children as young as three can help sprinkle cheese and add toppings while older kids can assist with the dough preparation. This interactive approach not only makes dinner fun but encourages kids to try new ingredients when they're involved in the cooking process.

Recipe FAQs
- → Can I make these pizza cupcakes ahead of time?
Yes! You can prepare these up to the baking step and refrigerate for up to 24 hours. When ready to serve, bake for an additional 2-3 minutes beyond the recommended time. You can also fully bake them, cool completely, and refrigerate for up to 3 days. Reheat in a 350°F oven for 5-7 minutes until warmed through.
- → What can I use instead of crescent roll dough?
Pizza dough, puff pastry, or refrigerated biscuit dough make excellent substitutes. Each will provide a slightly different texture - pizza dough will be chewier, puff pastry flakier, and biscuit dough more tender. Adjust baking time accordingly as these alternatives may cook at different rates.
- → How do I prevent the bottoms from getting soggy?
Start by placing cheese on the bottom before the sauce. This creates a barrier that helps keep the dough crisp. You can also pre-bake the dough cups for 5 minutes before adding fillings, which helps create a moisture barrier. Finally, avoid overfilling with sauce, using just enough for flavor.
- → Can I freeze these pizza cupcakes?
Absolutely! Bake them completely, then allow to cool fully before placing in an airtight container with parchment paper between layers. Freeze for up to 3 months. To reheat, place frozen cupcakes in a 350°F oven for 10-12 minutes or until heated through and crisp again.
- → What are some vegetarian topping options?
Great vegetarian toppings include diced bell peppers, sliced mushrooms, spinach, black olives, cherry tomatoes, pineapple, artichoke hearts, and red onions. You can also add fresh basil after baking. For extra flavor, try different cheese combinations like feta, goat cheese, or smoked mozzarella.
- → How can I make these pizza cupcakes gluten-free?
Look for gluten-free crescent roll dough alternatives in specialty stores or online. Several brands make gluten-free pizza dough or biscuit dough that would work well. Just ensure your pizza sauce and toppings are also gluten-free. The cooking method remains the same, though you might need to adjust baking time slightly.