Gluten-Free Mini Cheesecakes

Featured in Sweet Treats and Baked Goods.

Discover how to make delicious gluten-free mini cheesecakes effortlessly in a muffin pan. These creamy handheld treats combine velvety cheesecake with a buttery graham cracker crust. No springform pan or complicated water baths are needed! Simply use cupcake liners, and a few simple ingredients, and bake until golden perfection. Serve plain or top them with fresh berries, lemon curd, whipped cream, or your choice of toppings. Perfect for celebrations, these make-ahead desserts are freezer-friendly and easy to decorate, offering a decadent, crowd-pleasing dessert option.

Fatiha
Updated on Sat, 19 Apr 2025 18:51:16 GMT
A plate of desserts with berries and cream. Pin it
A plate of desserts with berries and cream. | zestplate.com

These decadent gluten-free mini cheesecakes have transformed my dessert game completely. The perfect balance of creamy cheesecake filling nestled on a buttery graham cracker crust delivers all the indulgence of traditional cheesecake in adorable individual portions.

My neighbor first tasted these at our summer block party and immediately requested the recipe. Now these little bites are the most requested dessert when we host dinner parties.

  • Gluten-free graham crackers: Make the perfect crunchy base that holds up beautifully against the creamy filling
  • Cream cheese: Creates that signature tangy cheesecake flavor; use full-fat for the richest texture
  • Sour cream: Adds moisture and a subtle tang that balances the sweetness
  • Eggs: Provide structure and that classic baked cheesecake texture
  • Vanilla extract: Enhances the warm flavor profile; use pure rather than imitation
  • Lemon juice: Brightens all the flavors without making it taste lemony
  • Brown sugar: In the crust, adds a caramel note that complements the graham crackers

Step-by-Step Instructions

Prepare the Crust:
Process gluten-free graham crackers until they become fine crumbs. Mix with melted butter and brown sugar until the mixture resembles wet sand. This creates the perfect base that holds together when pressed firmly into cupcake liners. Press about 1½ tablespoons into each liner using the bottom of a glass for even packing.
Mix the Filling:
Beat room temperature cream cheese until completely smooth and fluffy, about 2 minutes. Room temperature is critical here to avoid frustrating lumps that never fully incorporate. Add sour cream, eggs, sugar, vanilla, and lemon juice, beating on low speed to prevent incorporating air which can cause cracks. The mixture should be silky smooth and pourable.
Bake to Perfection:
Fill each liner nearly to the top using a greased cookie scoop for precision. Bake at 350°F for exactly 20 minutes until edges are just set but centers still have a slight jiggle. The tops will puff up in the oven but will sink slightly as they cool, creating the perfect surface for toppings. Resist the urge to overbake as this can cause dryness.
Chill Thoroughly:
Allow the cheesecakes to cool completely at room temperature before refrigerating at least 3 hours, or preferably overnight. This resting period is essential for the flavors to meld and the perfect texture to develop. The patience is worth it for that signature smooth, creamy bite.
A plate of desserts with berries and blueberries. Pin it
A plate of desserts with berries and blueberries. | zestplate.com

The Schär Honeygrams used in this recipe have become my secret weapon for gluten-free graham crusts. I discovered them after struggling with homemade alternatives that always seemed to fall apart. These provide that authentic graham flavor that makes these mini cheesecakes taste just like the ones from my favorite bakery.

Perfect Make-Ahead Dessert

These mini cheesecakes actually benefit from being made ahead of time. The flavors deepen and the texture becomes even more luxurious after an overnight rest in the refrigerator. This makes them perfect for entertaining when you want to minimize day-of preparations. Simply keep them covered in the refrigerator without toppings until about 30 minutes before serving.

Creative Topping Ideas

The beauty of these mini cheesecakes lies in their versatility as a blank canvas for countless toppings. Fresh berries provide vibrant color and a burst of natural sweetness. Lemon curd adds a bright citrusy punch that contrasts beautifully with the rich cheesecake. Chocolate ganache delivers an indulgent twist. For special occasions arrange a DIY topping bar with various options so guests can customize their own dessert experience.

Troubleshooting Common Issues

Even experienced bakers occasionally encounter challenges with cheesecake. If your mini cheesecakes crack on top, do not worry. The natural settling process as they cool will usually close minor cracks. For stubborn cracks, a dollop of whipped cream or fruit topping provides the perfect camouflage. If your cheesecakes sink dramatically in the center, it typically indicates underbaking. Next time, leave them in the oven for 1-2 minutes longer.

A plate of desserts with berries and cream. Pin it
A plate of desserts with berries and cream. | zestplate.com

Frequently Asked Questions

→ How can I make a gluten-free graham cracker crust?

Crush your favorite gluten-free graham crackers, such as Schär Honeygrams, then mix with melted butter and brown sugar. Press the mixture into muffin liners as the base for the cheesecakes.

→ What toppings work best for mini cheesecakes?

Popular toppings include fresh berries, lemon curd, whipped cream, chocolate sauce, caramel, or canned cherry pie filling. Customize to suit your taste!

→ Can I make these mini cheesecakes ahead of time?

Yes, these mini cheesecakes are ideal for making ahead. Allow them to cool, cover, and refrigerate. Add any toppings just before serving.

→ Can I freeze mini cheesecakes?

Absolutely! Freeze plain mini cheesecakes (without toppings) in an airtight container for up to one month. Defrost overnight in the fridge or at room temperature for 5-10 minutes.

→ Why do my cheesecakes crack on top?

Cracks often occur during baking but aren’t a problem. Once cooled, the cheesecakes will settle, and the cracks typically close up. Using room-temperature ingredients can also help reduce cracks.

Gluten-Free Mini Cheesecakes

Creamy gluten-free cheesecakes on graham cracker crust.

Prep Time
10 Minutes
Cook Time
20 Minutes
Total Time
30 Minutes
By: Fatiha

Category: Desserts

Difficulty: Easy

Cuisine: American

Yield: 12 Servings (12 mini cheesecakes)

Dietary: Vegetarian, Gluten-Free

Ingredients

→ Crust

01 1 1/4 cup gluten-free graham cracker crumbs (e.g., Schär Honeygrams)
02 2 tablespoons light brown sugar, packed
03 5 tablespoons butter, melted

→ Cheesecake Filling

04 2 (8-ounce) packages cream cheese, room temperature
05 1/2 cup sour cream, room temperature
06 2 large eggs, room temperature
07 1/2 cup granulated sugar
08 2 teaspoons pure vanilla extract
09 1 teaspoon lemon juice

Instructions

Step 01

Preheat oven to 350°F (175°C). Line a 12-cup muffin pan with cupcake liners.

Step 02

Crush the Honeygrams into crumbs using a food processor or by placing the cookies in a plastic storage bag and smashing with a rolling pin. Combine crumbs, brown sugar, and melted butter. Add approximately 1 1/2 tablespoons of the mixture to the bottom of each muffin liner and press down firmly to create a crust.

Step 03

In a mixing bowl, beat room-temperature cream cheese with a hand mixer on low-medium speed for 1-2 minutes until fluffy. Add sour cream, eggs, granulated sugar, vanilla extract, and lemon juice. Mix until fully combined and smooth.

Step 04

Using a greased cookie scoop, divide the cheesecake filling evenly among the muffin liners, filling each to the top.

Step 05

Bake for 20 minutes, or until the tops begin to brown slightly. Remove from the oven; the cheesecakes will appear puffy but will sink as they cool.

Step 06

Allow the cheesecakes to cool completely, then cover and refrigerate for at least 3 hours or overnight. Let them stand at room temperature for 2-3 minutes before removing from the muffin pan.

Step 07

Serve plain or add your favorite toppings before serving.

Notes

  1. Use room-temperature ingredients to avoid lumps in the batter.
  2. Quickly bring cold ingredients to room temperature by submerging them in a bowl of warm water for 2-3 minutes.
  3. Cracks on the surface will disappear as the cheesecakes sink while cooling.
  4. Mini cheesecakes can be made ahead of time and stored in the refrigerator for convenience.

Tools You'll Need

  • 12-cup muffin pan
  • Cupcake liners
  • Food processor or plastic storage bag with a rolling pin
  • Mixing bowl
  • Hand mixer
  • Cookie scoop

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains dairy (cream cheese, sour cream, butter)
  • Contains eggs

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 153
  • Total Fat: 8 g
  • Total Carbohydrate: 17 g
  • Protein: 2 g