
These decadent gluten-free mini cheesecakes have transformed my dessert game completely. The perfect balance of creamy cheesecake filling nestled on a buttery graham cracker crust delivers all the indulgence of traditional cheesecake in adorable individual portions.
My neighbor first tasted these at our summer block party and immediately requested the recipe. Now these little bites are the most requested dessert when we host dinner parties.
- Gluten-free graham crackers: Make the perfect crunchy base that holds up beautifully against the creamy filling
- Cream cheese: Creates that signature tangy cheesecake flavor; use full-fat for the richest texture
- Sour cream: Adds moisture and a subtle tang that balances the sweetness
- Eggs: Provide structure and that classic baked cheesecake texture
- Vanilla extract: Enhances the warm flavor profile; use pure rather than imitation
- Lemon juice: Brightens all the flavors without making it taste lemony
- Brown sugar: In the crust, adds a caramel note that complements the graham crackers
Step-by-Step Instructions
- Prepare the Crust:
- Process gluten-free graham crackers until they become fine crumbs. Mix with melted butter and brown sugar until the mixture resembles wet sand. This creates the perfect base that holds together when pressed firmly into cupcake liners. Press about 1½ tablespoons into each liner using the bottom of a glass for even packing.
- Mix the Filling:
- Beat room temperature cream cheese until completely smooth and fluffy, about 2 minutes. Room temperature is critical here to avoid frustrating lumps that never fully incorporate. Add sour cream, eggs, sugar, vanilla, and lemon juice, beating on low speed to prevent incorporating air which can cause cracks. The mixture should be silky smooth and pourable.
- Bake to Perfection:
- Fill each liner nearly to the top using a greased cookie scoop for precision. Bake at 350°F for exactly 20 minutes until edges are just set but centers still have a slight jiggle. The tops will puff up in the oven but will sink slightly as they cool, creating the perfect surface for toppings. Resist the urge to overbake as this can cause dryness.
- Chill Thoroughly:
- Allow the cheesecakes to cool completely at room temperature before refrigerating at least 3 hours, or preferably overnight. This resting period is essential for the flavors to meld and the perfect texture to develop. The patience is worth it for that signature smooth, creamy bite.

The Schär Honeygrams used in this recipe have become my secret weapon for gluten-free graham crusts. I discovered them after struggling with homemade alternatives that always seemed to fall apart. These provide that authentic graham flavor that makes these mini cheesecakes taste just like the ones from my favorite bakery.
Perfect Make-Ahead Dessert
These mini cheesecakes actually benefit from being made ahead of time. The flavors deepen and the texture becomes even more luxurious after an overnight rest in the refrigerator. This makes them perfect for entertaining when you want to minimize day-of preparations. Simply keep them covered in the refrigerator without toppings until about 30 minutes before serving.
Creative Topping Ideas
The beauty of these mini cheesecakes lies in their versatility as a blank canvas for countless toppings. Fresh berries provide vibrant color and a burst of natural sweetness. Lemon curd adds a bright citrusy punch that contrasts beautifully with the rich cheesecake. Chocolate ganache delivers an indulgent twist. For special occasions arrange a DIY topping bar with various options so guests can customize their own dessert experience.
Troubleshooting Common Issues
Even experienced bakers occasionally encounter challenges with cheesecake. If your mini cheesecakes crack on top, do not worry. The natural settling process as they cool will usually close minor cracks. For stubborn cracks, a dollop of whipped cream or fruit topping provides the perfect camouflage. If your cheesecakes sink dramatically in the center, it typically indicates underbaking. Next time, leave them in the oven for 1-2 minutes longer.

Frequently Asked Questions
- → How can I make a gluten-free graham cracker crust?
Crush your favorite gluten-free graham crackers, such as Schär Honeygrams, then mix with melted butter and brown sugar. Press the mixture into muffin liners as the base for the cheesecakes.
- → What toppings work best for mini cheesecakes?
Popular toppings include fresh berries, lemon curd, whipped cream, chocolate sauce, caramel, or canned cherry pie filling. Customize to suit your taste!
- → Can I make these mini cheesecakes ahead of time?
Yes, these mini cheesecakes are ideal for making ahead. Allow them to cool, cover, and refrigerate. Add any toppings just before serving.
- → Can I freeze mini cheesecakes?
Absolutely! Freeze plain mini cheesecakes (without toppings) in an airtight container for up to one month. Defrost overnight in the fridge or at room temperature for 5-10 minutes.
- → Why do my cheesecakes crack on top?
Cracks often occur during baking but aren’t a problem. Once cooled, the cheesecakes will settle, and the cracks typically close up. Using room-temperature ingredients can also help reduce cracks.